MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2933661436132594
cnr4.302262049919832
efc0.5957515292631237
fber90.22455596923828
fwhmavg4.110126666666667
fwhmx3.97536
fwhmy4.23291
fwhmz4.12211
icvscsf0.21727129909546444
icvsgm0.44270642755070305
icvswm0.3400222733538325
inumed0.8361632227897644
inurange0.2938689053058624
qi10.0
qi20.0011869876654893353
rpvecsf23.88524881698231
rpvegm12.721457028402957
rpvewm19.86370508730834
sizex180
sizey256
sizez256
snrcsf2.6415150665140206
snrgm10.115703235378593
snrtotal10.139244777309598
snrwm17.66051603003618
snrdcsf11.64264849044434
snrdgm23.384433322768086
snrdtotal24.09544939706522
snrdwm37.259266377983224
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.409224427953922
summarybgmad17.583511352539062
summarybgmean53.84501647949219
summarybgmedian49.69857406616211
summarybgn3133561.0
summarybgp0528.17641830444336
summarybgp9594.21373748779297
summarybgstdv20.892005920410156
summarycsfk-0.2504609183900999
summarycsfmad133.88543701171875
summarycsfmean317.71441650390625
summarycsfmedian312.48248291015625
summarycsfn13042.0
summarycsfp05139.68367614746094
summarycsfp95512.2778320312499
summarycsfstdv118.29215240478516
summarygmk0.31985555973925717
summarygmmad59.96965026855469
summarygmmean628.4130859375
summarygmmedian627.625732421875
summarygmn27870.0
summarygmp05528.1348052978516
summarygmp95731.9445129394531
summarygmstdv62.043582916259766
summarywmk0.8333820854085441
summarywmmad49.27788543701172
summarywmmean995.8399658203125
summarywmmedian1000.0188598632812
summarywmn175355.0
summarywmp05891.0916320800782
summarywmp951081.421740722656
summarywmstdv56.624393463134766
tpmoverlapcsf0.20166879892349243
tpmoverlapgm0.5196388959884644
tpmoverlapwm0.5435361266136169
wm2max0.7266891198541569

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumccc2095710e4058109b1f8c537e4db30
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.