MRIQC: individual T1w report

Summary

Subject ID: 058_ControlPre.
Date and time: 2018-05-07, 01:24.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2933661436132594
cnr			4.302262049919832
efc			0.5957515292631237
fber			90.22455596923828
fwhm	avg		4.110126666666667
fwhm	x		3.97536
fwhm	y		4.23291
fwhm	z		4.12211
icvs	csf		0.21727129909546444
icvs	gm		0.44270642755070305
icvs	wm		0.3400222733538325
inu	med		0.8361632227897644
inu	range		0.2938689053058624
qi	1		0.0
qi	2		0.0011869876654893353
rpve	csf		23.88524881698231
rpve	gm		12.721457028402957
rpve	wm		19.86370508730834
size	x		180
size	y		256
size	z		256
snr	csf		2.6415150665140206
snr	gm		10.115703235378593
snr	total		10.139244777309598
snr	wm		17.66051603003618
snrd	csf		11.64264849044434
snrd	gm		23.384433322768086
snrd	total		24.09544939706522
snrd	wm		37.259266377983224
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.409224427953922
summary	bg	mad	17.583511352539062
summary	bg	mean	53.84501647949219
summary	bg	median	49.69857406616211
summary	bg	n	3133561.0
summary	bg	p05	28.17641830444336
summary	bg	p95	94.21373748779297
summary	bg	stdv	20.892005920410156
summary	csf	k	-0.2504609183900999
summary	csf	mad	133.88543701171875
summary	csf	mean	317.71441650390625
summary	csf	median	312.48248291015625
summary	csf	n	13042.0
summary	csf	p05	139.68367614746094
summary	csf	p95	512.2778320312499
summary	csf	stdv	118.29215240478516
summary	gm	k	0.31985555973925717
summary	gm	mad	59.96965026855469
summary	gm	mean	628.4130859375
summary	gm	median	627.625732421875
summary	gm	n	27870.0
summary	gm	p05	528.1348052978516
summary	gm	p95	731.9445129394531
summary	gm	stdv	62.043582916259766
summary	wm	k	0.8333820854085441
summary	wm	mad	49.27788543701172
summary	wm	mean	995.8399658203125
summary	wm	median	1000.0188598632812
summary	wm	n	175355.0
summary	wm	p05	891.0916320800782
summary	wm	p95	1081.421740722656
summary	wm	stdv	56.624393463134766
tpm	overlap	csf	0.20166879892349243
tpm	overlap	gm	0.5196388959884644
tpm	overlap	wm	0.5435361266136169
wm2max			0.7266891198541569

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	ccc2095710e4058109b1f8c537e4db30
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.